Lab 5 DNA Sequences
The Following Sequences are intended for Lab 5: Bioinformatics. If you are unable to download the sequences using the links below, Contact Us to request that they be sent over email.
Module I: Sanger Sequence Analysis
- Example-WSpecF.ab1 (Wolbachia forward sequence)
- Example-WSpecR.ab1 (Wolbachia reverse sequence)
- Example-CO1R (Arthropod reverse sequence)
- Example-CO1F (Arthropod forward sequence)
Module II: NCBI Sequence Taxonomy and BLAST Searching
Wolbachia Sequence for BLAST Search (.fasta file)
GTTGCAGCAATGGTAGACTCAACGGTAGCAATAACTGCAGGACCTAGAGGAAAAACAGTAGGGATTAAT
AAGCCCTATGGAGCACCAGAAATTACAAAAGATGGTTATAAGGTGATGAAGGGTATCAAGCCTGAAAAA
CCATTAAACGCTGCGATAGCAAGCATCTTTGCACAGAGTTGTTCTCAATGTAACGATAAAGTTGGTGATG
GTACAACAACGTGCTCAATACTAACTAGCAACATGATAATGGAAGCTTCAAAATCAATTGCTGCTGGAAA
CGATCGTGTTGGTATTAAAAACGGAATACAGAAGGCAAAAGATGTAATATTAAAGGAAATTGCGTCAATG
TCTCGTACAATTTCTCTAGAGAAAATAGACGAAGTGGCACAAGTTGCAATAATCTCTGCAAATGGTGATA
AGGATATAGGTAACAGTATCGCTGATTCCGTGAAAAAAGTTGGAAAAGAGGGTGTAATAACTGTTGAAG
AGAGTAAAGGTTCAAAAGAGTTAGAAGTTGAGCTGACTACTGGCATGCAATTTGATCGCGGTTATCTCTC
TCCGTATTTTATTACAAATAATGAAAAAATGATCGTGGAGCTTGATAATCCTTATCTATTAATTACAGAGA
AAAAATTAAATATTATTCAACCTTTACTTCCTATTCTTGAAGCTATTGTTAAATCTGGTAAACCTTTGGTTA
TTATTGCAGAGGATATCGAAGGTGAAGCATTAAGCACTTTAGTTATCAATAAATTGCGTGGTGGTTTAAA
AGTTGCTGCAGTAAAAGCTCCAGGTTTTGGTGACAGAAGAAAGGAGATGCTCGAAGACATAGCAACTTTA
ACTGGTGCTAAGTACGTCATAAAAGATGAACTT
Module III: Phylogenetics
Example Wolbachia Sequences
If your arthropod was uninfected, use one of the following sequences to complete Module III.
- Wolbachia of Camponotus chromaiodes (Collected from Nashville, TN, USA)
- Wolbachia of Camponotus hyatti (Collected from Idaho, USA)
- Wolbachia of Camponotus pennsylvanicus (Collected from Tennessee, USA)
- Wolbachia of Culex pipiens (Collected from Wattwil, Switzerland)
FASTA Reference Sequences for Wolbachia Phylogenetics
The .fasta file below includes representative sequences from Wolbachia Supergroups A, B, C, D, E, F, and an outgroup, Ehrlichia chaffeensis. To add/remove sequences, open the file using a TextEditor or genomics software.
Unknown Arthopod Sequences
The .fasta files below include unknown arthropod sequences for Module III: Arthropod Phylogenetics.
FASTA Reference Sequences for Arthropod Phylogenetics
The .fasta files below include representative sequences from Arthropods and an outgroup, the tardigrade Hypsibius pallidoides. To add/remove sequences, open the file using a TextEditor or genomics software.
- Arthropods listed by Common name (recommended)
- Arthropods listed by Scientific name