Informatics

Li, Jia, Simmons, Alan J., Hawkins, Caroline V., Chiron, Sophie, Ramirez-Solano, Marisol A., Tasneem, Naila, Kaur, Harsimran, Xu, Yanwen, Revetta, Frank, Vega, Paige N., Bao, Shunxing, Cui, Can, Tyree, Regina N., Raber, Larry W., Conner, Anna N., Pilat, Jennifer M., Jacobse, Justin, McNamara, Kara M., Allaman, Margaret M., Raffa, Gabriella… Read More

Hoang, Nhung, Sardaripour, Neda, Ramey, Grace D., Schilling, Kurt, Liao, Emily, Chen, Yiting, Park, Jee Hyun, Bledsoe, Xavier, Landman, Bennett A., Gamazon, Eric R., Benton, Mary Lauren, & Capra, John A., Rubinov, Mikail. (2024). Integration of estimated regional gene expression with neuroimaging and clinical phenotypes at biobank… Read More

Hu, Yunfei; Xie, Manfei; Li, Yikang; Rao, Mingxing; Shen, Wenjun; Luo, Can; Qin, Haoran; Baek, Jihoon; Zhou, Xin Maizie. “Benchmarking clustering, alignment, and integration methods for spatial transcriptomics.” Genome Biology, volume 25, Article number: 212 (2024). https://doi.org/10.1186/s13059-024-02665-w. Published: 09 August 2024. Understanding the complexities… Read More

Zhang, Liting; Zhou, Xin Maizie; Mallory, Xian. “SCCNAInfer: a robust and accurate… Read More

Juming Xiong, Yilin Liu, Ruining Deng, Regina N. Tyree, Hernan Correa, Girish Hiremath, Yaohong Wang, and Yuankai Huo. “Deep Learning-based Open Source Toolkit for Eosinophil Detection in Pediatric Eosinophilic Esophagitis.” Proceedings of SPIE Medical Imaging 2024: Digital and Computational Pathology, vol. 12933, 129330X, 2024, San Diego, California Eosinophilic Esophagitis… Read More

Haoju Leng, Ruining Deng, Shunxing Bao, Dazheng Fang, Bryan A. Millis, Yucheng Tang, Haichun Yang, Xiao Wang, Yifan Peng, Lipeng Wan, and Yuankai Huo. “High-performance Data Management for Whole Slide Image Analysis in Digital Pathology.” Proceedings of SPIE Medical Imaging 2024: Digital and Computational Pathology, vol. 12933, 129330Y, 2024,… Read More

Leon Y. Cai, Stephanie N. Del Tufo, Laura Barquero, Micah D’Archangel, Lanier Sachs, Laurie E. Cutting, Nicole Glaser, Simona Ghetti, Sarah S. Jaser, Adam W. Anderson, Lori C. Jordan, and Bennett A. Landman. “Spatiospectral Image Processing Workflow Considerations for Advanced MR Spectroscopy of the Brain.” Proceedings of SPIE Medical… Read More

Cailey I. Kerley, Tin Q. Nguyen, Karthik Ramadass, Laurie E. Cutting, Bennett A. Landman, and Matthew Berger. “pyPheWAS Explorer: A Visualization Tool for Exploratory Analysis of Phenome-Disease Associations.” JAMIA Open, vol. 6, no. 1, 2023, Objective: This study aims to provide an easy-to-use tool for visualizing phenome-wide association studies… Read More