Research
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mTG-Gelatin phantoms as standardized testbeds for skin biomechanical measurements with Myoton
Ghosh, Shramana; Rector, John A.; Saknite, Inga; Smith, Hayden B.; Walsh, Kristy M.; Byram, Brett C.; Bellan, Leon M.; Tkaczyk, Eric R. “mTG-Gelatin phantoms as standardized testbeds for skin biomechanical measurements with Myoton.” Journal of the Mechanical Behavior of Biomedical Materials, 2024, 106651, https://doi.org/10.1016/j.jmbbm.2024.106651. Read MoreAug. 22, 2024
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SCCNAInfer: a robust and accurate tool to infer the absolute copy number on scDNA-seq data
Zhang, Liting; Zhou, Xin Maizie; Mallory, Xian. “SCCNAInfer: a robust and accurate… Read MoreAug. 22, 2024
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SE(3)-Equivariant and Noise-Invariant 3D Rigid Motion Tracking in Brain MRI
Benjamin Billot, Neel Dey, Daniel Moyer, Malte Hoffmann, Esra Abaci Turk, Borjan Gagoski, P. Ellen Grant, & Polina Golland. (2024). SE(3)-Equivariant and Noise-Invariant 3D Rigid Motion Tracking in Brain MRI. IEEE Transactions on Medical Imaging, 1-12. https://doi.org/10.1109/TMI.2024.3411989 Tracking movement accurately in medical imaging, like MRI scans… Read MoreJul. 21, 2024
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High-frequency ultrasound accuracy in preoperative cutaneous melanoma assessment: A meta-analysis
Georgina E. Sellyn, Andrea A. Lopez, Shramana Ghosh, Michael C. Topf, Heidi Chen, Eric Tkaczyk, & Jennifer G. Powers. (2024). High-frequency ultrasound accuracy in preoperative cutaneous melanoma assessment: A meta-analysis. Journal of the European Academy of Dermatology and Venereology. https://doi.org/10.1111/jdv.20179 High-frequency ultrasound (HFUS) is a safe… Read MoreJul. 21, 2024
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Deep conditional generative model for longitudinal single-slice abdominal computed tomography harmonization
Xin Yu, Qi Yang, Yucheng Tang, Riqiang Gao, Shunxing Bao, Leon Y. Cai, Ho Hin Lee, Yuankai Huo, Ann Zenobia Moore, Luigi Ferrucci, and Bennett A. Landman. “Deep Conditional Generative Model for Longitudinal Single-slice Abdominal Computed Tomography Harmonization.” Journal of Medical Imaging (Bellingham), vol. 11, no. 2, 024008, March… Read MoreJun. 20, 2024
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Empirical assessment of the assumptions of ComBat with diffusion tensor imaging
Michael E. Kim, Chenyu Gao, Leon Y. Cai, Qi Yang, Nancy R. Newlin, Karthik Ramadass, Angela Jefferson, Derek Archer, Niranjana Shashikumar, Kimberly R. Pechman, Katherine A. Gifford, Timothy J. Hohman, Lori L. Beason-Held, Susan M. Resnick, Stefan Winzeck, Kurt G. Schilling, Panpan Zhang, Daniel Moyer, and Bennett A. Landman. “… Read MoreJun. 20, 2024
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Evaluation of Mean Shift, ComBat, and CycleGAN for Harmonizing Brain Connectivity Matrices Across Sites
Hanliang Xu, Nancy R. Newlin, Michael E. Kim, Chenyu Gao, Praitayini Kanakaraj, Aravind R. Krishnan, Lucas W. Remedios, Nazirah Mohd Khairi, Kimberly Pechman, Derek Archer, Timothy J. Hohman, Angela L. Jefferson, Ivana Išgum, Yuankai Huo, Daniel Moyer, Kurt G. Schilling, and Bennett A. Landman. “Evaluation of Mean Shift, ComBat,… Read MoreJun. 20, 2024
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Inter-vendor harmonization of CT reconstruction kernels using unpaired image translation
Aravind R. Krishnan, Kaiwen Xu, Thomas Li, Chenyu Gao, Lucas W. Remedios, Praitayini Kanakaraj, Ho Hin Lee, Shunxing Bao, Kim L. Sandler, Fabien Maldonado, Ivana Išgum, and Bennett A. Landman. “Inter-vendor Harmonization of CT Reconstruction Kernels Using Unpaired Image Translation.” Proceedings of SPIE Medical Imaging 2024: Image Processing, vol. Read MoreJun. 20, 2024
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MidRISH: Unbiased harmonization of rotationally invariant harmonics of the diffusion signal
Nancy R. Newlin, Michael E. Kim, Praitayini Kanakaraj, Tianyuan Yao, Timothy Hohman, Kimberly R. Pechman, Lori L. Beason-Held, Susan M. Resnick, Derek Archer, Angela Jefferson, Bennett A. Landman, and Daniel Moyer. “MidRISH: Unbiased Harmonization of Rotationally Invariant Harmonics of the Diffusion Signal.” Magnetic Resonance Imaging, 2024, doi:10.1016/j.mri.2024.03.033. Data harmonization… Read MoreJun. 20, 2024
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Deep Learning-Based Open Source Toolkit for Eosinophil Detection in Pediatric Eosinophilic Esophagitis
Juming Xiong, Yilin Liu, Ruining Deng, Regina N. Tyree, Hernan Correa, Girish Hiremath, Yaohong Wang, and Yuankai Huo. “Deep Learning-based Open Source Toolkit for Eosinophil Detection in Pediatric Eosinophilic Esophagitis.” Proceedings of SPIE Medical Imaging 2024: Digital and Computational Pathology, vol. 12933, 129330X, 2024, San Diego, California Eosinophilic Esophagitis… Read MoreJun. 20, 2024